Package: optRF 2.0.0

optRF: Optimising Random Forest Stability by Determining the Optimal Number of Trees
Calculating the stability of random forest with certain numbers of trees. The non-linear relationship between stability and numbers of trees is described using a logistic regression model and used to estimate the optimal number of trees.
Authors:
optRF_2.0.0.tar.gz
optRF_2.0.0.zip(r-4.7)optRF_2.0.0.zip(r-4.6)optRF_2.0.0.zip(r-4.5)
optRF_2.0.0.tgz(r-4.6-any)optRF_2.0.0.tgz(r-4.5-any)
optRF_2.0.0.tar.gz(r-4.7-any)optRF_2.0.0.tar.gz(r-4.6-any)
optRF_2.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
optRF/json (API)
| # Install 'optRF' in R: |
| install.packages('optRF', repos = c('https://tmlange.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/tmlange/optrf/issues
- SNPdata - Simulated data of wheat yield and genomic markers
Last updated from:17ec97985e. Checks:7 WARNING, 1 ERROR, 1 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | WARNING | 202 | ||
| source / vignettes | ERROR | 198 | ||
| linux-release-x86_64 | WARNING | 150 | ||
| macos-release-arm64 | WARNING | 124 | ||
| macos-oldrel-arm64 | WARNING | 181 | ||
| windows-devel | WARNING | 109 | ||
| windows-release | WARNING | 83 | ||
| windows-oldrel | WARNING | 89 | ||
| wasm-release | OK | 96 |
Exports:estimate_numtreesestimate_stabilitymeasure_stabilityopt_importanceopt_predictionplot_stability
Dependencies:bootCircStatscombinatdotCall64dtwfieldsirrlatticelpSolvemapsMASSMatrixminpack.lmnnetordinalForestproxyrangerRColorBrewerRcppRcppEigenspamverificationviridisLite
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Estimate the required number of trees to reach a certain stability | estimate_numtrees |
| Estimate the stability of random forest | estimate_stability |
| Measure the stability of random forest | measure_stability |
| Optimise random forest variable importance estimations | opt_importance |
| Optimise random forest predictions | opt_prediction |
| Plot random forest stability | plot_stability |
| Simulated data of wheat yield and genomic markers | SNPdata |
