Package: APS 1.0.1
APS: Analysing Prediction Stability of Non-Deterministic Prediction Models
Provides methods to analyse the stability of non-deterministic prediction models. Prediction stability is quantified either as data-based prediction stability (phi) or as model-based prediction stability (psi). The package implements measures for categorical, ordinal, and metric predictions based on repeated model fitting and corresponding predictions. Methods are based on Lange et al. (2025) <doi:10.1186/s12859-025-06097-1>.
Authors:
APS_1.0.1.tar.gz
APS_1.0.1.zip(r-4.7-any)APS_1.0.1.zip(r-4.6-any)APS_1.0.1.zip(r-4.5-any)
APS_1.0.1.tgz(r-4.6-any)APS_1.0.1.tgz(r-4.5-any)
APS_1.0.1.tar.gz(r-4.7-any)APS_1.0.1.tar.gz(r-4.6-any)
APS_1.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
APS/json (API)
| # Install 'APS' in R: |
| install.packages('APS', repos = c('https://tmlange.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/tmlange/aps/issues
- example_prediction_matrix - Example prediction matrices for non-deterministic models
- example_prediction_space - Example prediction matrices for non-deterministic models
- genotype - Maize breeding trial data
- phenotype - Maize breeding trial data
Last updated from:4a3d85cec1. Checks:7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | NOTE | 126 | ||
| source / vignettes | OK | 188 | ||
| linux-release | NOTE | 143 | ||
| macos-release | NOTE | 160 | ||
| macos-oldrel | NOTE | 132 | ||
| windows-devel | NOTE | 76 | ||
| windows-release | NOTE | 100 | ||
| windows-oldrel | NOTE | 62 | ||
| wasm-release | OK | 100 |
Exports:calculate_phicalculate_psi
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Calculate the data-based prediction stability (phi) | calculate_phi |
| Calculate the model-based prediction stability (psi) | calculate_psi |
| Example prediction matrices for non-deterministic models | example_prediction_matrix example_prediction_space |
| Maize breeding trial data | genotype MaizeBreedingTrial phenotype |